SCUBA

VMP1 — Vacuole membrane protein 1

VMP1 belongs to a gene co-expression module in 13 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

VMP1's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsmRNA splicing
RNA processing
ANKRD11, ARGLU1, CYBC1, LUC7L3, PLCG2, PNN, SON, SRRM2 +1 moreView in SCUBA
CD8⁺ T cellsActomyosin Motility
Cytoskeletal
ACTR2, ADGRE5, AP2B1, ARGLU1, CAPNS1, EMB, GNAI2, MYH9 +2 moreView in SCUBA
EndothelialChronic Inflammatory Activation
Inflammation
ABL2, ADAMTS9, DDX21, EMP1, FOSL2, HRH1, KRT10, LMNA +2 moreView in SCUBA
EnterocytesEpithelial NF-kB response
Inflammation
ATP10B, CASP1, CCL28, E2F3, FAM135A, GSKIP, INPP4B, LYN +4 moreView in SCUBA
FibroblastsCytokine Inflammatory Response
Inflammatory
CXCL2, DNAJB4, GFPT2, HES4, MAP3K8, MMP19, RASL11A, RGCC +4 moreView in SCUBA
Goblet cellsStress Survival Response
Stress
EPHA2, ERRFI1, EZR, KLF6, LDLR, LMNA, MCL1, NEDD9 +3 moreView in SCUBA
Innate lymphoid cellsCytokine-driven Activation
activation
BIRC3, CALR, CD69, DUSP5, GADD45G, ISG15, NCOA7, PPIF +2 moreView in SCUBA
MacrophagesEndolysosomal Trafficking
Vesicular traficking
ANKRD10, ATP1A1, ATP6V0A1, CHFR, CHML, FAR1, FBXL5, GSAP +21 moreView in SCUBA
MonocytesAP-1 Stress Response
Stress
BTG2, FOSB, MYLIP, PLK3, PMAIP1, PPP1R10, PPP1R15B, RGS2 +1 moreView in SCUBA
Natural Killer cellsCytokine Feedback Response
Immune regulation
DYNLL1, LMO4, N4BP2L2, PABPC1, PAXX, PRPF4B, SOCS3, TPT1View in SCUBA
NeutrophilsPI3K Migration Signaling
Migration & adhesion
CPPED1, CREB5, CYTIP, PELI1, PTEN, RASSF3, SEMA4D, SH2D3C +3 more
PericytesCytokine Inflammatory Response
Inflammatory
ADAMTS4, C11orf96, CEBPB, CEBPD, GEM, ID4, KCNE4, PHLDA1 +4 moreView in SCUBA
Smooth muscle cellsMatrix-integrin interaction
ECM remodeling
C1S, EML1, FBN1, ITGA1, ITGAV, LRP1, P4HA2View in SCUBA

About the gene

SynonymsEPG3, TANGO5, TMEM49
Chromosome17: 59707192-59842255
Predicted locationIntracellular, Membrane
Essential geneYes
Protein classEssential proteins, Predicted intracellular proteins, Predicted membrane proteins, Transporters
Biological processAutophagy, Cell adhesion, Lipid transport, Transport

Function

Phospholipid scramblase involved in lipid homeostasis and membrane dynamics processes. Has phospholipid scramblase activity toward cholesterol and phosphatidylserine, as well as phosphatidylethanolamine and phosphatidylcholine. Required for autophagosome formation: participates in early stages of autophagosome biogenesis at the endoplasmic reticulum (ER) membrane by reequilibrating the leaflets of the ER as lipids are extracted by ATG2 (ATG2A or ATG2B) to mediate autophagosome assembly. Regulates ATP2A2 activity to control ER-isolation membrane contacts for autophagosome formation. In addition to autophagy, involved in other processes in which phospholipid scramblase activity is required. Modulates ER contacts with lipid droplets, mitochondria and endosomes. Plays an essential role in formation of cell junctions. Upon stress such as bacterial and viral infection, promotes formation of cytoplasmic vacuoles followed by cell death (By similarity). Involved in the cytoplasmic vacuolization of acinar cells during the early stage of acute pancreatitis (By similarity). (Microbial infection) Host factor required for infection by all flaviviruses tested such as Zika virus and Yellow fever virus. Probably required post-entry of the virus to facilitate the ER membrane remodeling necessary to form replication organelles

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.